HTSlib CRAM reader has out-of-bounds reads due to improper validation of input
Description
HTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data. In the cram_decode_slice() function called while reading CRAM records, validation of the reference id field occurred too late, allowing two out of bounds reads to occur before the invalid data was detected. The bug does allow two values to be leaked to the caller, however as the function reports an error it may be difficult to exploit them. It is also possible that the program will crash due to trying to access invalid memory. Versions 1.23.1, 1.22.2 and 1.21.1 include fixes for this issue. There is no workaround for this issue.
Affected products
1Patches
0No patches discovered yet.
Vulnerability mechanics
AI mechanics synthesis has not run for this CVE yet.
References
2- github.com/samtools/htslib/commit/9cefb46453ad471e933b8212d4f45920524d3357mitrex_refsource_MISC
- github.com/samtools/htslib/security/advisories/GHSA-mqm2-v645-3qhrmitrex_refsource_CONFIRM
News mentions
0No linked articles in our index yet.